10.17863/CAM.551
Reinhardt, Aleks
Frenkel, Daan
0000-0002-6362-2021
DNA brick self-assembly with an off-lattice potential
DSpace at Cambridge (dev)
2016
DSpace at Cambridge (dev)
DSpace at Cambridge (dev)
2016-07-05
2016-07-05
2016-06-07
en
Article
1744-683X
https://www.repository.cam.ac.uk/handle/1810/256616
1744-6848
10.1039/c6sm01031h
10.17863/cam.135
Attribution 4.0 International
Attribution 4.0 International
Attribution 4.0 International
http://creativecommons.org/licenses/by/4.0/
http://creativecommons.org/licenses/by/4.0/
http://creativecommons.org/licenses/by/4.0/
We report Monte Carlo simulations of a simple off-lattice patchy-particle model for DNA ‘bricks’. We relate the parameters that characterise this model with the binding free energy of pairs of single-stranded DNA molecules. We verify that an off-lattice potential parameterised in this way reproduces much of the behaviour seen with a simpler lattice model we introduced previously, although the relaxation of the geometric constraints leads to a more error-prone self-assembly pathway. We investigate the self-assembly process as a function of the strength of the non-specific interactions. We show that our off-lattice model for DNA bricks results in robust self-assembly into a variety of target structures.
This work was supported by the Engineering and Physical Sciences Research Council [Programme Grant EP/I001352/1]. Research carried out in part at the Center for Functional Nanomaterials, Brookhaven National Laboratory, which is supported by the US Department of Energy, Office of Basic Energy Sciences, under Contract No. DE-SC0012704.
This is the final version of the article. It first appeared from the Royal Society of Chemistry via https://doi.org/10.1039/C6SM01031H
EPSRC
EP/I001352/1