10.80001/VWM
Axel Visel
Axel
Visel
Catia Attanasio
Catia
Attanasio
Transgenic Mouse Enhancer Assay - Vista Enhancer ID: mm924
See link to the data preparation protocols for this study in the Additional Information section
**Enhancer location:** Mouse genome mm9, chr17: 44754669-44756591
**Name:** mCF205
**Vista Enhancer ID:** mm924
**Nearest craniofacial gene or locus:** Runx2
**Enhancer expression:** positive
**Tissues where active:** branchial arch, facial mesenchyme
**Comment on OPT files:**
This data set includes the following:
* 4 movie (.avi) files: A CLIP file that provides an overview of the 3-D model generated by Optical Projection Tomography (OPT)Thresholding-based false-color representation shows unstained regions of the embryo in green, LacZ signal in red. In addition, 3 movies representing a pass-through view of the OPT model in the coronal, sagittal, or transverse plane.
* 4 files in .tgz format. Each of these corresponds to one of the .avi files and unzips to a set of .png files, each of which represents the individual frames of the movie (and, in case of the transverse/sagittal/coronal movies, can be used to retrieve individual virtual sections through features of interest in .png image format). [.tgz files can be unzipped with WinZip or Stuffit on a PC or Mac. On linux, treat the file as a gzipped .tar file: gunzip < file.tgz | tar xvf - ]
FaceBase (www.facebase.org)
2020
Imaging assay
Imaging
Enhancer activity detection by reporter gene assay
Optical projection tomography
OPT
Imaging
Dataset
Craniofacial development
Craniosafial malformation
en
Dataset
1
National Institute of Health (NIH)
5U01DE024449
FaceBase Coordinating Center